#!/usr/bin/env python

import sys
import os

#python magic to add the current directory to the pythonpath
sys.path.append(os.getcwd())

# Set up django environment 
if not os.environ.has_key('DJANGO_SETTINGS_MODULE'):
    os.environ['DJANGO_SETTINGS_MODULE'] = 'settings'

# construct a Search object with Search_residues (pgd_search/models), and a
# writer, and pass both to dumpsearch (pgd_search/dump/DataDump.py). tests.py
# might be useful. worth noting that the index on search_residue is
# i-notation.  so -1 0 +1 etc. so that searches remain valid regardless of max
# segment length

threshold = 90
max = 1.0
min = 0.0

from pgd_search.models import *
from pgd_core.models import *
from pgd_search.dump import DataDump
from StringIO import StringIO

# create Search
search = Search(segmentLength=0)
search.resolution_min = min
search.resolution_max = max
#search.threshold = threshold
search.save()

search_residue = Search_residue()
search_residue.index = 0 #-4, -3, -2, -1, 0, 1, 2, ...
search.residues.add(search_residue)
search_residue.search = search
#search_residue.ome_include = True
#search_residue.ome = "90-155"

writer = StringIO()

DataDump.dumpSearch(search, writer)

writer_string = writer.getvalue()
print writer_string