diff --git a/pgd/pgd_search/templates/qtiphelp.html b/pgd/pgd_search/templates/qtiphelp.html index 9e20bf0..ad126c5 100755 --- a/pgd/pgd_search/templates/qtiphelp.html +++ b/pgd/pgd_search/templates/qtiphelp.html @@ -4,29 +4,29 @@

Peptide Help

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This is generic peptide help

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Which amino acids are searched? The default is all of them. If you click the plus sign next to the field after highlighting residues, this will exclude them instead of include them.

Secondary Structure Help

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This is generic secondary structure help

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Which secondary-structure types are searched? The default is all of them. These types are defined by DSSP and are: G: 310-helix; H: α-helix; I: π-helix; T: hydrogen-bonded turn; E: β-sheet; B: isolated β-bridge; S: non-hydrogen-bonded turn. Lowercase letters indicate the initial or terminal residues of the secondary-structure types.

This is Residue Properties Help

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This is example help for phi

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This is example help for psi

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This is example help for bm

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This is example help for bg

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This is example help for bs

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This is example help for ome

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This is example help for phi

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This is example help for psi

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The average main-chain B-factor

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The B-factor of the γ-carbon (which determines whether the χ1 sidechain dihedral angle is well-defined)

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The average side-chain B-factor

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ω defines the planarity of the peptide bond and generally stays close to 180° (for trans peptides) or 0° (for cis peptides)

Angles Help

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This is a placeholder for a1's help text.

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This is a placeholder for a2's help text.

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This is example help for a3

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This is example help for a4

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This is example help for a5

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This is example help for a6

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This is example help for a7

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Lengths Help

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This is example help for L1

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This is example help for L2

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This is example help for L3

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This is example help for L4

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This is example help for L5

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